Rice
FIS

FIS image header
  •  
  •  
  •  
  •  
  •  
Download 
Scholarly Interest Report
         
David Zhang
Assistant Professor
Ted Law Jr. Assistant Professor of Bioengineering
 
e-mail:dyz1@rice.edu
 
  • Ph.D. Computation and Neural Systems (2010) California Institute of Technology, Pasadena, CA
  • B.S. Biology (2005) California Institute of Technology, Pasadena, CA
 
Primary Department
   Department of Bioengineering
Picture
 
Department Affiliations
 
  • Department of Bioengineering
  • Systems, Synthetic, and Physical Biology
  •  
    Websites
     Research group website (NABLab)
     
    Selected Publications
     Refereed articles
     

    Chunyan Wang, Jin H. Bae & David Yu Zhang "Native characterization of nucleic acid motif thermodynamics via non-covalent catalysis." Nature Communications, 7 (2016) : 10319.

     
     

    Lucia R Wu, Juexiao Sherry Wang, John Z Fang, Emily R Evans, Alessandro Pinto, Irena Pekker, Richard Boykin, Celine Ngouenet, Philippa J Webster, Joseph Beechem & David Yu Zhang ""Continuously tunable nucleic acid hybridization probes"." Nature Methods, 12 (2015) : 1191–1196.

     
     

    Wang, J. Sherry; Zhang, David Yu "“Simulation-Guided DNA Probe Design for Consistently Ultraspecific Hybridization.”." Nature Chemistry, 7 (2015) : 545-553 .

     
     

    Wu, Lucia R.*; Wang, J. Sherry*; Fang, John Z.; Reiser, Emily; Pekker, Irena; Boykin, Richard; Ngouenet, Celine; Webster, Philippa J.; Beechem, Joseph; Zhang, David Yu^.  “Continuously Tunable Nucleic Acid Hybridization Probes.”  Nature Methods, 12: 1191-1196 (2015).  (Cover article)

     
     

    Sadowski, John; Calvert, Colby; Zhang, David Yu; Pierce, Niles A.; Yin, Peng^.
    “Developmental Self-Assembly of a DNA Tetrahedron.” ACS Nano, 8: 3251-3259 (2014)

     
     

    Wu, Lucia R.; Fang, John Z.; Zhang, David Yu "“High dynamic range quantitation of nucleic acids with heterogeneous probe sets.”." In Progress

     
     

    Wu, Yuqiang; Zhang, David Yu^; Yin, Peng; Vollmer, Frank^. “Ultraspecific and Highly
    Sensitive Nucleic Acid Detection by Integrating a DNA Catalytic Network with a Label-Free
    Microcavity.” Small, 10: 2067-2076 (2014).

     
     

    Chen, Sherry X; Zhang, David Yu^; Seelig, Georg^. “Conditionally fluorescent molecular probes for detecting single base changes in double-stranded DNA.” Nature Chemistry, 5: 782-789 (2013)

     
     

    Sadowski, John; Calvert, Colby; Zhang, David Yu; Pierce, Niles A.; Yin, Peng. “Triggered Isothermal Assembly of a DNA Tetrahedron.” (manuscript accepted, ACS Nano)

     
     

    Wu, Yuqiang; Zhang, David Yu^; Yin, Peng; Vollmer, Frank^. “Label-free real-time amplification and detection of DNA and RNA by WGMRs.” (manuscript accepted, Small)

     
     

    Zhang, David Yu*^; Hariadi, Rizal F.*^; Choi, H. M. T.; Winfree, Erik. “Integrating Strand Displacement Circuitry with DNA Tile Self-assembly.” Nature Communications, 4: 1965 (2013).

     
    Presentations
     Invited Talks
     

    "Hybridization Approaches to Rare Sequence Variant Detection in Human DNA." American Association of Clinical Chemistry Emerging Diagnostics conference, (November 2015)

     
     

    "Hybridization Approaches to Rare Sequence Variant Detection in Human DNA." Thermo Fisher (Life Technologies). (July 2015)

     
     

    "Hybridization Approaches to Rare Sequence Variant Detection in Human DNA." DNA and Molecular Programming conference (DNA21), (August 2015)

     
     

    "Hybridization Approaches to Rare Sequence Variant Detection in Human DNA." California Institute of Technology, Department of Bioengineering. (November 2015)

     
     

    "Hybridization Approaches to Rare Sequence Variant Detection in Human DNA." Bio-Rad Technologies, Inc.. (July 2015)

     
     

    "Hybridization Approaches to Rare Sequence Variant Detection in Human DNA." DiaCarta. (August 2015)

     
     

    "Hybridization Approaches to Rare Sequence Variant Detection in Human DNA." Yale University, Department of Nanobiology. (August 2015)

     
     

    "Nucleic Acid Diagnostic Biotechnologies based on Hybridization." Biomaterials for Medical Applications Symposium, Hong Kong University of Science and Technology, . (April 2015)

     
     

    "Nucleic Acid Diagnostic Biotechnologies based on Hybridization.." Beijing Genomics Institute. (April 2015)

     
     

    "Nucleic Acid Diagnostic Biotechnologies based on Hybridization."." University of Science and Technology of China, School of Life Sciences. (April 2015)

     
     

    "Nucleic Acid Diagnostic Biotechnologies based on Hybridization." Tsinghua University, School of Life Sciences. (May 2015)

     
     

    "Nucleic Acid Diagnostic Biotechnologies based on Hybridization." Peking University, Center for Quantitative Biology. (May 2015)

     
     

    "Nucleic Acid Diagnostic Biotechnologies based on Hybridization.." Tufts University, Department of Chemistry, . (June 2015)

     
     

    "Nucleic Acid Diagnostic Biotechnologies based on Hybridization." Tianjin University, Department of Chemical Engineering. (May 2015)

     
     

    "Nucleic AcidDiagnostic Biotechnologies based on Hybridization.." Shanghai Institute of Applied Physics, Chinese Academy of Sciences. (May 2015)

     
     

    "Nucleic Acid Diagnostic Biotechnologies based on Hybridization.." Harvard Medical School, Wyss Institute for Biologically Inspired Engineering. (March 2015)

     
     

    "Clinical RNA SNP Detection with the nCounter Platform." Nanostring Technologies. (April 2014)

     
     

    University of Washington, Molecular Engineering Symposium, "Nucleic Acid Diagnostic
    Biotechnologies based on Hybridization."

     
     

    UT Houston Med School, Dept. of Biochemistry, "Nucleic Acid Diagnostic Biotechnologies based on Hybridization."

     
     

    "Nucleic Acid Hybridization Probes: From Theory to Commercialization." Baylor College of Medicine, Computational and Integrative Biomedical Research Center. (May 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Hologic, Inc.. (July 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Affymetrix, Inc.. (June 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Biosearch Technologies. (June 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Konica Minolta, (Aug 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." JSR Life Sciences. (June 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Asuragen, Inc.. (May 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Advanced Cell Diagnostics. (June 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Bio-Rad Technologies, Inc. (Aug 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Cepheid, Inc.. (Aug 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Integrated DNA Technologies. (Aug 2014)

     
     

    "Ultraspecific Nucleic Acid Hybridization Technologies." Roka Biosciences, Inc. (July 2014)

     
     

    "Ultraspecific Nucleic Acid Probes for Rare Mutation Detection." 11th annual Foundations of Nanotechnology conference. (April 2014)

     
     

    "Ultraspecific X-Probes for Rare Nucleic Acid Detection." Rutgers University. (June 2014)

     
     

    "Ultraspecific X-Probes for Rare Nucleic Acid Detection." Houston Methodist Research Institute. (April 2014)

     
     

    Nanostring Technologies, "Nucleic Acid Bioengineering - Molecular Tools."

     
     

    Cornell Biomedical Engineering, “Nucleic Acid Molecular Engineering for Diagnostic Applications.”

     
     

    Nanostring Technologies, "Computational Evaluation of SNP/Indel Targets for Ultraspecific Probes."

     
     

    UIUC Bioengineering, “Nucleic Acid Molecular Engineering for Diagnostic Applications.”

     
     

    UCLA Bioengineering, “Nucleic Acid Molecular Engineering for Diagnostic Applications.”

     
     

    Carnegie Mellon Biological Sciences, “Nucleic Acid Molecular Engineering for Diagnostic Applications.”

     
     

    UC Berkeley Chemistry, “Nucleic Acid Molecular Engineering for Diagnostic
    Applications.”

     
     

    UC Berkeley Bioengineering, “Nucleic Acid Molecular Engineering for Diagnostic
    Applications.”

     
     

    University of Washington Bioengineering, “Nucleic Acid Molecular Engineering for Diagnostic Applications.”

     
     

    "Computational Evaluation of SNPs/Indels Targets for Ultraspecific Probes", presented at Nanostring Technologies Nov 2013.

     
    Editorial Positions
     Other, Proceedings of the National Academy of Science (PNAS). (2014 - 2014)

     Other, Nature Nanotechnology. (2013 - 2014)

     Other, Chemical Communications. (2013 - 2014)

     Other, Chemical Science. (2013 - 2014)

     Other, Biomacromolecules. (2013 - 2014)

     Other, Nature Chemistry. (2013 - 2014)

     Other, Nucleic Acids Research. (2013 - 2014)

     Other, Advanced Materials. (2013 - 2014)

     Other, Journal of the American Chemical Society. (2013 - 2014)

     Other, Nature Communications. (2013 - 2014)

     Other, Bioinformatics. (2013 - 2014)