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Scholarly Interest Report
         
Caleb Kemere
Assistant Professor
Assistant Professor of Electrical and Computer Engineering
 
e-mail:Caleb.Kemere@rice.edu
 
  • Ph.D. Electrical Engineering (2006) Stanford University
  • B.S. Electrical Engineering (1998) University of Maryland
  • M.S. Electrical Engineering (2000)
 
Primary Department
   Department of Electrical and Computer Engineering
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Selected Publications
 Abstracts
 

Chun-Ting Wu, Caleb Kemere, and Dayoun Ji, "Hippocampal replay correlates retrieval of fear memory in inhibitory avoidance task." Society for Neuroscience Abstracts, Program #725.21, October 2015.

 
 

Etienne Ackermann and Caleb Kemere, " Latent variable modeling of hippocampal replay." Society for Neuroscience Abstracts, Program # 85.19, October 2015.

 
 Refereed articles
 

A. Pediredla, S. Zhang, B. Avants, F. Ye, S. Nagayama, Z. Chen, C. Kemere, J. Robinson, and A. Veeraraghavan, “Theoretical and Experimental Characterization of the Depth Limit of Imaging through Scattering Media using Selective Plane of Illumination Microscopy (SPIM)”, in preparation.

 
 

C.-T. Wu, C. Kemere, D. Ji, “Hippocampal awake replay is involved in contextual fear memory retrieval”, in revision.

 
 

F. Vitale, S. Summerson, B. Aazhang, C. Kemere, M. Pasquali, "Neural stimulation and recording with bidirectional, soft carbon nanotube fiber microelectrodes," ACS Nano, vol. 9, no. 4, pp. 4465–4474, April 2015. 

 
 

S. R. Summerson, B. Aazhang, and  C. Kemere, "Investigating irregularly patterned deep brain stimulation signal design using biophysical models." Front. Comput. Neurosci. 9, (2015). 

 
 

S. Summersonn, C. Kemere, “Deep brain stimulation in the 6-OHDA rat,” Journal of Visualized Experiments, invited/in preparation.

 
 

Summerson, Samantha R., Behnaam Aazhang, and Caleb T. Kemere. "Characterizing Motor and Cognitive Effects Associated With Deep Brain Stimulation in the GPi of Hemi-Parkinsonian Rats." (2014).

 
 

Summerson, Samantha R., and Caleb Kemere. "Multi-electrode Recording of Neural Activity in Awake Behaving Animals." Basic Electrophysiological Methods (2015): 76.

 
 

C. Kemere, K. Kay, L. M. Frank "“Optogenetic activation and recording technologies,”." In Revision

 
 

C. Kemere, M. F. Carr, M. P. Karlsson, L. M. Frank "“Rapid and Continuous Modulation of Hippocampal Network State during Exploration of New Places.” ." 

 
 

S. Summerson, B. Aazhang, C. Kemere "“Characterizing Motor and Cognitive Effects Associated with Deep Brain Stimulation in the GPi of Hemi-Parkinsonian Rats”." In Revision

 
 

S. P. Jadhav, C. Kemere, P. W. German, and L. M. Frank "“Awake hippocampal sharp-wave ripples support spatial memory.”." 

 
 

C. Kemere, G. Santhanam, B. M. Yu, A. Afshar, S. I. Ryu, T. H. Meng, and K. V. Shenoy "“Detecting neural-state transitions using hidden Markov models for motor cortical prostheses,” ." 

 
 

B. M. Yu, C. Kemere, G. Santhanam, A. Afshar, S. I. Ryu, T. H. Meng, M. Sahani, and K. V. Shenoy "“Mixture of trajectory models for neural decoding of goal-directed movements.,”." 

 
 Refereed conference papers
 

Adithya Kumar Pediredla, Shizheng Zhang, Ben Avants, Fan Ye, Shin Nagayama, Ziying Chen, Caleb Kemere, Jacob Robinson, Ashok Veeraraghavan "Deep Imaging in Scattering Media with Single Photon Selective Plane Illumination Microscopy (SPIM)." Journal of Biomedical Optics, 21

 
 

Adithya Kumar Pediredla, Shizheng Zhang, Ben Avants, Fan Ye, Shin Nagayama, Ziying Chen, Caleb Kemere, Jacob T Robinson, Ashok Veeraraghavan "Deep imaging in scattering media with selective plane illumination microscopy." Journal of Biomedical Optics, 21: 126009-126009.

 
 

Ankit Sethi, Caleb T Kemere "Mulitchannel real time spike sorting for decoding ripple sequences."  2015 7th International IEEE/EMBS Conference on Neural Engineering (2015/4/22) : 956-959.

 
 

Etienne Ackermann and Caleb Kemere, "Scoring Sequences of Hippocampal Activity using Hidden Markov Models," in Proceedings of the IEEE Engineering in Medicine and Biology Conference, August 2016.

 
 

Etienne Ackermann, Caleb Kemere "Scoring sequences of hippocampal activity using hidden Markov models." 2016 IEEE 38th Annual International Conference of the Engineering in Medicine and Biology Society : 957-960.

 
 

Behnaam Aazhang, Nitin Tandon, Valentin Dragoi, Dora Angelaki, Rob Raphael, Caleb Kemere, Jacob Robinson, Melissa S Thompson, Gulf Coast Consortia "5 th Annual Symposium." BioScience

 
 

Danielle M Friend, Caleb Kemere, Alexxai V Kravitz "Quantifying Recording Quality in In Vivo Striatal Recordings." Current protocols in neuroscience (2015/1/5) : 6.28. 1-6.28. 9.

 
 

Flavia Vitale, Samantha R Summerson, Behnaam Aazhang, Caleb Kemere, Matteo Pasquali "Neural stimulation and recording with bidirectional, soft carbon nanotube fiber microelectrodes." ACS nano, 9 (2015/3/31) : 4465-4474.

 
 

Samantha R Summerson, Behnaam Aazhang, Caleb Kemere "Investigating irregularly patterned deep brain stimulation signal design using biophysical models." Frontiers in computational neuroscience, 9 (2015)

 
 

Samantha R Summerson, Caleb Kemere "Multi-electrode Recording of Neural Activity in Awake Behaving Animals." Basic Electrophysiological Methods (2015/2/25) : 76.

 
 

Sethi, Ankit, and Caleb Kemere. "Real time algorithms for sharp wave ripple detection." In Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE, pp. 2637-2640. IEEE, 2014.

 
 

Summerson, Samantha R., Charlie Grealish, Behnaam Aazhang, and Caleb T. Kemere. "Randomized stimulation signal design to create partial informational lesions in parkinsonian neuronal networks." In Acoustics, Speech and Signal Processing (ICASSP), 2014 IEEE International Conference on, pp. 3626-3630. IEEE, 2014.

 
 

S. Summerson, C. Kemere, B. Aazhang "“Current Amplitude-Dependent Modulation of Rotational Behavior with GPi Stimulation in the Rodent Model of Parkinson’s Disease.” ." 

 
 

Caleb Kemere, Byron Yu, Gopal Santhanam, Stephen Ryu, Afsheen Afshar, Teresa Meng, and Krishna Shenoy "“Hidden Markov models for spatial and temporal estimation for prosthetic control.” ." 

 
 

Stephen O’Driscoll, Teresa Meng, Krishna Shenoy, and Caleb Kemere "“Neurons to Silicon: Implantable Prosthesis Processor.” ." 

 
 Other
 

Aazhang, Behnaam, Nitin Tandon, Dora Angelaki, David Dickman, Rob Raphael, Caleb Kemere, Jacob Robinson, Melissa S. Thompson, and Gulf Coast Consortia. "4 th Annual Symposium." BioScience (2014).

 
Presentations
 Invited Papers
 

"“Neuroengineering at Rice University in 2013”." (April 13)

 
 

"“Towards Real-Time Manipulation of Learning and Memory”." (September 6)

 
 Invited Talks
 

"Closing the Loop: Interaction with Neural Circuits during Behavior." (Oct 5, 2016)

 
 

"Building interfaces with memory and cognitive processes”, Building Rice Academics in Neuroscience (BRAiN) Neuroscience Seminar Series, Rice University, Houston, TX, March 21, 2015.

 
 

“Engineering Memories”, 1st International Workshop on Cutting Edge Tools in Neuroscience, University of Sao Paulo, Brazil, July 4, 2015.

 
 

“Understanding and Optimizing Deep Brain Stimulation Therapy “, Caltech CNS Seminar, February 23, 2015

 
 

""Behavior Modulates Hippocampal Information Processing”." (February 7)

 
 

"“Engineering Memories”,." (February 13)

 
 

"“Interacting with Memories"." (September 10)

 
 

"“Technology for interfacing with the dynamic brain”." (May 17)

 
 

"“Understanding and Optimizing Deep Brain Stimulation Therapy”." (April 6)

 
 

"“Hippocampal circuit dynamics and memory during behavior”,." (February 11)

 
 

"“Hippocampal circuit dynamics and memory during behavior”,." (April 27)

 
 

"“Hippocampal circuit dynamics and memory during behavior”,." (May 12)

 
 

"“Hippocampal circuit dynamics and memory during behavior”,." (November 9)

 
 

"“Advancing Neural Interfaces: Signal Processing, Optogenetics and Beyond”."

 
 

"“Manipulating Memories: towards cognitive neural interfaces”." (September 16)

 
 

""Understanding memory by interfacing with the brain: signal processing to optogenetics"." (December)

 
 

"“Slow down and remember: behavior modulates information flow in the hippocampus”." (June 30)

 
 

"“Understanding memory by interfacing with the brain: signal processing to optogenetics”." (April 20)

 
 Posters
 

Advisor.  "Comparison between Optical Signature from Fiber Photometry and LFP from Electrical Recording of Hippocampus in Freely Moving Rat." Gulf Coast Cluster for NeuroEngineering, (Oct 5, 2016)

 
 

Advisor.  "Hidden Markov Models of the Rodent Hippocampus." (Oct 5, 2016)

 
 

Advisor.  "Investigating Hippocampal Replay and Working Memory during Spatial Learning

 ." Gulf Coast Cluster for NeuroEngineering, (Oct 5, 2016)

 
 

Advisor.  "Low Latency, Open Source, Real-Time Sharp-Wave Ripple Detection System." Gulf Coast Cluster for NeuroEngineering, (Oct 5, 2016)

 
 

Advisor.  "Wireless Programmable Rodent Deep Brain Stimulation System." Gulf Coast Cluster for NeuroEngineering, (Oct 5, 2016)

 
Supervised Theses & Dissertations
 Eric Jonas, “Stochastic Architectures for Probabilistic Computation”. (2013) (Thesis Committee Member)

 Samantha Summerson, PhD Engineering Deep Brain Stimulation as a Treatment for Parkinson's Disease: from Models to Materials. (2014) (Thesis Committee Member)

 Qiong Huang, MS TabletGaze: Dataset and Algorithm for Unconstrained Appearance-based Gaze Estimation in Mobile Tablets. (Thesis Committee Member)

 Ankit Sethi, MS Methods for Ripple Detection and Spike Sorting during Hippocampal Replay. (Thesis Director)

 Daniel Gonzales, MS Scalable nano-electrode electrophysiology in intact small organisms. (Thesis Committee Member)

 Kathryn Hedrick, “The Neural Computations of Spatial Memory from Single Cells to Networks”. (Thesis Committee Member)

 Shizheng Zhang, MS Depth Limit of Imaging through Scattering Media using Selective Plane of Illumination Microscopy (SPIM). (Thesis Committee Member)